A ribozyme selected from variants of U6 snRNA promotes 2',5'-branch formation

RNA. 2001 Jan;7(1):29-43. doi: 10.1017/s1355838201001510.

Abstract

In vitro selection was used to sample SnRNA-related sequences for ribozyme activities, and several 2',5'-branch-forming ribozymes were isolated. One such ribozyme is highly dependent upon an 11-nt motif that contains a conserved U6 snRNA sequence (ACAGAGA-box) known to be important for pre-mRNA splicing. The ribozyme reaction is similar to the first step of splicing in that an internal 2'-hydroxyl of an unpaired adenosine attacks at the 5'-phosphate of a guanosine. It differs in that the leaving group is diphosphate rather than a 5' exon. The finding that lariat formation can be accomplished by a small RNA with sequences related to U6 snRNA indicates that the RNA available in the spliceosome may be involved in RNA-catalyzed branch formation.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • Conserved Sequence
  • Exons
  • Gene Library
  • Genetic Variation*
  • Introns
  • Kinetics
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Oligodeoxyribonucleotides
  • Phylogeny
  • RNA Precursors / chemistry
  • RNA Precursors / genetics*
  • RNA Precursors / metabolism
  • RNA Splicing
  • RNA, Catalytic / metabolism*
  • RNA, Small Nuclear / genetics*
  • Saccharomyces cerevisiae / genetics
  • Sequence Alignment
  • Sequence Homology, Nucleic Acid
  • Substrate Specificity
  • Trypanosomatina / genetics

Substances

  • Oligodeoxyribonucleotides
  • RNA Precursors
  • RNA, Catalytic
  • RNA, Small Nuclear
  • U6 small nuclear RNA