RNA trafficking signals in human immunodeficiency virus type 1

Mol Cell Biol. 2001 Mar;21(6):2133-43. doi: 10.1128/MCB.21.6.2133-2143.2001.

Abstract

Intracellular trafficking of retroviral RNAs is a potential mechanism to target viral gene expression to specific regions of infected cells. Here we show that the human immunodeficiency virus type 1 (HIV-1) genome contains two sequences similar to the hnRNP A2 response element (A2RE), a cis-acting RNA trafficking sequence that binds to the trans-acting trafficking factor, hnRNP A2, and mediates a specific RNA trafficking pathway characterized extensively in oligodendrocytes. The two HIV-1 sequences, designated A2RE-1, within the major homology region of the gag gene, and A2RE-2, in a region of overlap between the vpr and tat genes, both bind to hnRNP A2 in vitro and are necessary and sufficient for RNA transport in oligodendrocytes in vivo. A single base change (A8G) in either sequence reduces hnRNP A2 binding and, in the case of A2RE-2, inhibits RNA transport. A2RE-mediated RNA transport is microtubule and hnRNP A2 dependent. Differentially labelled gag and vpr RNAs, containing A2RE-1 and A2RE-2, respectively, coassemble into the same RNA trafficking granules and are cotransported to the periphery of the cell. tat RNA, although it contains A2RE-2, is not transported as efficiently as vpr RNA. An A2RE/hnRNP A2-mediated trafficking pathway for HIV RNA is proposed, and the role of RNA trafficking in targeting HIV gene expression is discussed.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • Biological Transport
  • Cells, Cultured
  • Gene Products, gag / genetics
  • Gene Products, vpr / genetics
  • HIV-1 / genetics*
  • HIV-1 / pathogenicity
  • Heterogeneous-Nuclear Ribonucleoprotein Group A-B*
  • Heterogeneous-Nuclear Ribonucleoproteins
  • Mice
  • Molecular Biology / methods
  • Molecular Sequence Data
  • Oligodendroglia / cytology
  • Oligodendroglia / virology*
  • Peptide Fragments / genetics
  • RNA, Viral / analysis*
  • RNA, Viral / metabolism*
  • Response Elements / genetics*
  • Ribonucleoproteins / genetics
  • vpr Gene Products, Human Immunodeficiency Virus

Substances

  • Gene Products, gag
  • Gene Products, vpr
  • Heterogeneous-Nuclear Ribonucleoprotein Group A-B
  • Heterogeneous-Nuclear Ribonucleoproteins
  • Peptide Fragments
  • RNA, Viral
  • Ribonucleoproteins
  • hnRNP A2
  • vpr Gene Products, Human Immunodeficiency Virus
  • vpr peptide (13-33), Human immunodeficiency virus 1