Isolation and phylogeny of new endogenous retroviral sequences belonging to the HERV-F family

AIDS Res Hum Retroviruses. 2001 Mar 1;17(4):367-70. doi: 10.1089/08892220150503735.

Abstract

A new human endogenous retroviral family (HERV-F) has been identified from human chromosome 7q31.1-q31.3 that was identical to the XA34 cDNA clone isolated from a human glioma cDNA library with an ERV-9 env probe. We investigated pol gene sequences of the HERV-F family from a human monochromosomal DNA panel and analyzed these with HERV-F. The pol gene sequences of the HERV-F family were detected on chromosomes 3, 6, 7, 10, 11, 14, 19, 20, X, and Y as examined by PCR. Thirty-six pol gene sequences identified from the human chromosomes have a high degree of sequence similarity (80-99%) with that of the HERV-F. Phylogenetic analysis of pol gene sequences distinctively showed four groups, indicating that the HERV-F family could be amplified at least four times after the original integration into the human genome or represent integration events separately during hominid evolution. One clone (HFY-3) on chromosome Y shared 100% sequence identity with a clone (HF19-2) on chromosome 19, and a clone (HF20-6) on chromosome 20 suggests either a recent retrotransposition or a chromosomal translocation. The history of endogenous retroviral sequences may contribute to an understanding of evolutionary change in human genomes.

MeSH terms

  • Chromosomes, Human / genetics
  • Endogenous Retroviruses / classification
  • Endogenous Retroviruses / genetics*
  • Endogenous Retroviruses / isolation & purification*
  • Genes, pol / genetics
  • Humans
  • Molecular Sequence Data
  • Phylogeny*
  • Polymerase Chain Reaction
  • Sequence Analysis, DNA

Associated data

  • GENBANK/AB043907
  • GENBANK/AB043908
  • GENBANK/AB043909
  • GENBANK/AB043910
  • GENBANK/AB043911
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  • GENBANK/AB043922
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  • GENBANK/AB043924
  • GENBANK/AB043925
  • GENBANK/AB043926
  • GENBANK/AB043927
  • GENBANK/AB043928
  • GENBANK/AB043929
  • GENBANK/AB043930
  • GENBANK/AB043931
  • GENBANK/AB043932
  • GENBANK/AB043933
  • GENBANK/AB043934
  • GENBANK/AB043935
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  • GENBANK/AB043937
  • GENBANK/AB043938
  • GENBANK/AB043939
  • GENBANK/AB043940
  • GENBANK/AB043941
  • GENBANK/AB043942