Cloning of the human RoDH-related short chain dehydrogenase gene and analysis of its structure

Chem Biol Interact. 2001 Jan 30;130-132(1-3):457-67. doi: 10.1016/s0009-2797(00)00291-x.

Abstract

We have previously characterized the first human NAD(+)-dependent short chain dehydrogenase capable of oxidizing all-trans-retinol and androgens, and found only in the liver and skin. In a search for related human enzymes, we identified a partial open reading frame, which exhibited >60% sequence identity to human RoDH-4. The full-length cDNA for this enzyme was determined in our laboratory by 5'-RACE PCR and was found to be identical to the recently reported novel type of oxidative human 3alpha-hydroxysteroid dehydrogenase (3alpha-HSD). Analysis of the genomic structure revealed that the gene for RoDH-like 3alpha-HSD has four translated exons and, possibly, a fifth exon that codes for the 5'-untranslated region. The gene for RoDH-4 appears to have only four exons. The positions of exon-intron boundaries and the sizes of the protein coding regions are identical in 3alpha-HSD and RoDH-4. Moreover, both genes are mapped to chromosome 12q13, and are located in a close proximity to each other. Both genes appear to have satellite pseudogenes. Thus, RoDH-4 and 3alpha-HSD genes share similar structural organization and cluster on human chromosome 12, near the gene for 11-cis retinol dehydrogenase.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • 3-Hydroxysteroid Dehydrogenases / chemistry
  • 3-Hydroxysteroid Dehydrogenases / genetics
  • 3-Hydroxysteroid Dehydrogenases / metabolism
  • 3-alpha-Hydroxysteroid Dehydrogenase (B-Specific)
  • Alcohol Oxidoreductases / chemistry
  • Alcohol Oxidoreductases / genetics*
  • Alcohol Oxidoreductases / metabolism
  • Amino Acid Sequence
  • Base Sequence
  • Chromosome Mapping
  • Cloning, Molecular
  • DNA Primers / genetics
  • DNA, Complementary / genetics
  • Exons
  • Humans
  • Introns
  • Molecular Sequence Data
  • Sequence Homology, Amino Acid

Substances

  • DNA Primers
  • DNA, Complementary
  • 3-Hydroxysteroid Dehydrogenases
  • Alcohol Oxidoreductases
  • trans-retinol dehydrogenase
  • retinol dehydrogenase
  • 3-alpha-Hydroxysteroid Dehydrogenase (B-Specific)

Associated data

  • GENBANK/AF016509