Crystal structure of E. coli beta-carbonic anhydrase, an enzyme with an unusual pH-dependent activity

Protein Sci. 2001 May;10(5):911-22. doi: 10.1110/ps.46301.

Abstract

Carbonic anhydrases fall into three distinct evolutionary and structural classes: alpha, beta, and gamma. The beta-class carbonic anhydrases (beta-CAs) are widely distributed among higher plants, simple eukaryotes, eubacteria, and archaea. We have determined the crystal structure of ECCA, a beta-CA from Escherichia coli, to a resolution of 2.0 A. In agreement with the structure of the beta-CA from the chloroplast of the red alga Porphyridium purpureum, the active-site zinc in ECCA is tetrahedrally coordinated by the side chains of four conserved residues. These results confirm the observation of a unique pattern of zinc ligation in at least some beta-CAS: The absence of a water molecule in the inner coordination sphere is inconsistent with known mechanisms of CA activity. ECCA activity is highly pH-dependent in the physiological range, and its expression in yeast complements an oxygen-sensitive phenotype displayed by a beta-CA-deletion strain. The structural and biochemical characterizations of ECCA presented here and the comparisons with other beta-CA structures suggest that ECCA can adopt two distinct conformations displaying widely divergent catalytic rates.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Carbonic Anhydrases / chemistry*
  • Carbonic Anhydrases / isolation & purification
  • Carbonic Anhydrases / metabolism
  • Crystallography, X-Ray
  • Escherichia coli / enzymology*
  • Gene Deletion
  • Genetic Complementation Test
  • Hydrogen-Ion Concentration
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Folding
  • Protein Structure, Quaternary
  • Protein Structure, Secondary
  • Saccharomyces cerevisiae / enzymology
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / growth & development
  • Structure-Activity Relationship
  • Zinc / metabolism

Substances

  • Carbonic Anhydrases
  • Zinc

Associated data

  • PDB/1I6O
  • PDB/1I6P