Identity elements in tRNA-mediated transcription antitermination: implication of tRNA D- and T-arms in mRNA recognition

Microbiology (Reading). 2001 May;147(Pt 5):1223-1233. doi: 10.1099/00221287-147-5-1223.

Abstract

tRNA-mediated transcription antitermination has been shown to control the expression of several amino acid biosynthesis operons and aminoacyl-tRNA-synthetase-encoding genes in Gram-positive bacteria. A model originally put forward by Grundy & Henkin describes the conserved structural features of the leader sequences of these operons and genes. Two sequences of 3 and 4 nt, respectively, take a central position in this model and are thought to be responsible for the binding of the system-specific uncharged tRNA, an interaction which would stabilize the antiterminator conformation of the leader. Here a further evolution of this model is presented based on an analysis of trp regulation in Lactococcus lactis in which a function is assigned to hitherto unexplained conserved structures in the leader sequence. It is postulated that the mRNA-tRNA interaction involves various parts of the tRNA in addition to the anticodon and the acceptor in the original model and that these additional interactions contribute to the recognition of a specific tRNA, and hence to the specificity and efficacy of the regulatory response.

MeSH terms

  • 5' Untranslated Regions
  • Base Sequence
  • Conserved Sequence
  • Gene Expression Regulation, Bacterial
  • Lactococcus lactis / genetics*
  • Models, Molecular
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Nucleic Acid Conformation
  • Polymerase Chain Reaction
  • RNA, Messenger / genetics*
  • RNA, Transfer, Trp / genetics*
  • Substrate Specificity
  • Terminator Regions, Genetic*

Substances

  • 5' Untranslated Regions
  • RNA, Messenger
  • RNA, Transfer, Trp