Molecular analysis of endogenous retrovirus HRES-1: identification of frameshift mutations in region encoding putative 28-kDa autoantigen

Biochem Biophys Res Commun. 2001 May 4;283(2):437-44. doi: 10.1006/bbrc.2001.4814.

Abstract

A possible involvement of HTLV-1-related endogenous sequence 1 (HRES-1) in autoimmune diseases has been recently reported. In primate cells, PCRs and RT-PCRs using specific primers reveal the presence and the transcription of gag-related sequences. However antisera generated against selected HRES-1 peptides failed to detect a 28-kDa protein deduced from the translated gag ORF and described previously. Such discordant results led us to perform DNA cloning and sequencing of LTR- and gag-related nucleotidic fragments. Repeated sequence analyses on distinct samples revealed frameshift mutations in the gag and LTR ORFs. Our sequence analyses detected a stop codon in the gag-related ORF, which is inconsistent with the expression of a 28-kDa protein. Instead of the two ORFs previously found, our gag-related region contained three ORFs. One of them demonstrated higher nucleotidic and peptidic homologies with the p19 gag of HTLV-I. However, the molecular analyses of our new sequence did not show evidence of potent translation capacities.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Autoantigens / chemistry
  • Autoantigens / genetics*
  • Autoimmune Diseases / genetics
  • Autoimmune Diseases / immunology*
  • Autoimmune Diseases / virology*
  • Base Sequence
  • Biomarkers
  • Case-Control Studies
  • DNA / genetics
  • DNA Primers / genetics
  • Endogenous Retroviruses / genetics*
  • Endogenous Retroviruses / immunology*
  • Endogenous Retroviruses / pathogenicity
  • Frameshift Mutation*
  • Genes, gag
  • Molecular Sequence Data
  • Molecular Weight
  • Open Reading Frames
  • RNA, Messenger / genetics
  • Sequence Homology, Amino Acid
  • Sequence Homology, Nucleic Acid
  • Terminal Repeat Sequences

Substances

  • Autoantigens
  • Biomarkers
  • DNA Primers
  • RNA, Messenger
  • DNA