O(6)-allyl protected deoxyguanosine adducts of polycyclic aromatic hydrocarbons as building blocks for the synthesis of oligonucleotides

Chem Res Toxicol. 2001 Jun;14(6):708-19. doi: 10.1021/tx0002637.

Abstract

We describe a synthetic strategy for the preparation of oligonucleotides using N(2)-alkylated and O(6)-allyl protected deoxyguanosine phosphoramidite building blocks derived from cis- and trans-opened (+/-)-7beta,8alpha-dihydroxy-9alpha,10alpha-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene and (+/-)-7beta,8alpha-dihydroxy-9beta,10beta-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene and from trans-opened (+/-)-3alpha,4beta-dihydroxy-1alpha,2alpha-epoxy-1,2,3,4-tetrahydrobenzo[c]phenanthrene. The appropriately blocked phosphoramidite building blocks were obtained as mixtures of the cis- and trans-opened diol epoxide adducts upon initial reaction of the diol epoxides with O(6)-allyl-3',5'-di-O-(tert-butyldimethylsilyl)-2'-deoxyguanosine. Key to the present approach is the removal of the O(6)-allyl protecting group utilizing a palladium catalyst prior to release of the constructed oligonucleotide with ammonia from the solid support. The methodology described enables a very convenient access to oligonucleotides containing cis- and trans-N(2)-deoxyguanosine adducts of polycyclic aromatic hydrocarbons in different sequence contexts.

MeSH terms

  • Ammonia
  • DNA Adducts*
  • Deoxyguanosine / chemistry*
  • Environmental Pollutants
  • Oligonucleotides / chemical synthesis*
  • Palladium / chemistry
  • Polycyclic Aromatic Hydrocarbons / chemistry*

Substances

  • DNA Adducts
  • Environmental Pollutants
  • Oligonucleotides
  • Polycyclic Aromatic Hydrocarbons
  • Palladium
  • Ammonia
  • Deoxyguanosine