Identification of three new splice variants of the SNARE protein SNAP-23

Biochem Biophys Res Commun. 2001 Jul 13;285(2):320-7. doi: 10.1006/bbrc.2001.5144.

Abstract

SNAP-23 has an important role in protein-trafficking processes in mammalian cells and until yet two isoforms of SNAP-23 (SNAP-23a and SNAP-23b) have been described. In the present report, we have identified the existence of three new SNAP-23 isoforms (named SNAP-23c, SNAP-23d, and SNAP-23e), which arise from alternative splicing. By RT-PCR all five splice variants were shown to be expressed in four different human inflammatory cells (eosinophils, basophils, neutrophils, and peripheral blood mononuclear cells). Transfection of the human basophilic KU-812 cell line with plasmid constructs containing the cDNAs of the five splice variants located SNAP-23a and SNAP-23b primarily in the plasma membrane. The other three splice variants were localized both intracellularly and in the plasma membrane.

MeSH terms

  • Alternative Splicing*
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Basophils / metabolism
  • Carrier Proteins / chemistry
  • Carrier Proteins / genetics*
  • Cell Line
  • Eosinophils / metabolism
  • Exons
  • Genetic Variation*
  • Granulocytes / metabolism*
  • Humans
  • Introns
  • Leukocytes, Mononuclear / metabolism*
  • Mammals
  • Molecular Sequence Data
  • Neutrophils / metabolism
  • Protein Isoforms / chemistry
  • Protein Isoforms / genetics
  • Qb-SNARE Proteins
  • Qc-SNARE Proteins
  • Recombinant Fusion Proteins / biosynthesis
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Transcription, Genetic
  • Transfection

Substances

  • Carrier Proteins
  • Protein Isoforms
  • Qb-SNARE Proteins
  • Qc-SNARE Proteins
  • Recombinant Fusion Proteins
  • SNAP23 protein, human