nifH sequences and nitrogen fixation in type I and type II methanotrophs

Appl Environ Microbiol. 2001 Sep;67(9):4009-16. doi: 10.1128/AEM.67.9.4009-4016.2001.

Abstract

Some methane-oxidizing bacteria (methanotrophs) are known to be capable of expressing nitrogenase and utilizing N2 as a nitrogen source. However, no sequences are available for nif genes in these strains, and the known nitrogen-fixing methanotrophs are confined mainly to a few genera. The purpose of this work was to assess the nitrogen-fixing capabilities of a variety of methanotroph strains. nifH gene fragments from four type I methanotrophs and seven type II methanotrophs were PCR amplified and sequenced. Nitrogenase activity was confirmed in selected type I and type II strains by acetylene reduction. Activities ranged from 0.4 to 3.3 nmol/min/mg of protein. Sequence analysis shows that the nifH sequences from the type I and type II strains cluster with nifH sequences from other gamma proteobacteria and alpha proteobacteria, respectively. The translated nifH sequences from three Methylomonas strains show high identity (95 to 99%) to several published translated environmental nifH sequences PCR amplified from rice roots and a freshwater lake. The translated nifH sequences from the type II strains show high identity (94 to 99%) to published translated nifH sequences from a variety of environments, including rice roots, a freshwater lake, an oligotrophic ocean, and forest soil. These results provide evidence for nitrogen fixation in a broad range of methanotrophs and suggest that nitrogen-fixing methanotrophs may be widespread and important in the nitrogen cycling of many environments.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Methane / metabolism
  • Methylococcaceae / genetics
  • Methylococcaceae / metabolism*
  • Molecular Sequence Data
  • Nitrogen Fixation*
  • Oxidoreductases / chemistry
  • Oxidoreductases / genetics*
  • Oxidoreductases / metabolism
  • Phylogeny
  • Polymerase Chain Reaction
  • Rhizobiaceae / genetics
  • Rhizobiaceae / metabolism*
  • Sequence Analysis, DNA

Substances

  • Oxidoreductases
  • nitrogenase reductase
  • Methane

Associated data

  • GENBANK/AF378714
  • GENBANK/AF378715
  • GENBANK/AF378716
  • GENBANK/AF378717
  • GENBANK/AF378718
  • GENBANK/AF378719
  • GENBANK/AF378720
  • GENBANK/AF378721
  • GENBANK/AF378722
  • GENBANK/AF378723
  • GENBANK/AF378724