A comparison of software packages that assess linkage using a variance components approach

Genet Epidemiol. 2001:21 Suppl 1:S81-8. doi: 10.1002/gepi.2001.21.s1.s81.

Abstract

We report single-point and multipoint results from three statistical genetics software packages using a variance components approach for quantitative traits. When possible, we have shown the effects of covariates. Results from GENEHUNTER, SOLAR, and ACT software packages are compared for the quantitative trait immunoglobulin E (IgE) using chromosome 5 asthma familial data from Oxfordshire (England), Perth (Australia), and Freiburg (Germany), and using the genome-wide German data. Although few differences among variance components results for GENEHUNTER, SOLAR, and ACT were detected on a limited region of chromosome 5, these packages showed larger disagreement in the German data for chromosomes 1, 9, and 14.

Publication types

  • Comparative Study

MeSH terms

  • Adult
  • Analysis of Variance
  • Asthma / epidemiology
  • Asthma / genetics*
  • Australia
  • Child
  • Chromosome Mapping / statistics & numerical data*
  • Chromosomes, Human, Pair 5
  • Cross-Cultural Comparison
  • England
  • Female
  • Genetic Markers / genetics
  • Germany
  • Humans
  • Immunoglobulin E / blood
  • Male
  • Mathematical Computing*
  • Models, Genetic*
  • Quantitative Trait, Heritable
  • Software*

Substances

  • Genetic Markers
  • Immunoglobulin E