Sequence analysis of the complete genome of an iridovirus isolated from the tiger frog

Virology. 2002 Jan 20;292(2):185-97. doi: 10.1006/viro.2001.1245.

Abstract

We have isolated a tiger frog virus (TFV) from diseased tiger frogs, Rana tigrina rugulosa. The genome was a linear double-stranded DNA of 105,057 basepairs in length with a base composition of 55.01% G+C. About 105 open reading frames were identified with coding capacities for polypeptides ranging from 40 to 1294 amino acids. Computer-assisted analyses of the deduced amino acid sequences revealed that 39 of 105 putative gene products showed significant homology to functionally characterized proteins of other species in the GenBank/EMBL/DDBJ databases. These proteins included enzymes and structural proteins involved in virus replication, transcription, modification, and virus--host interaction. The deduced amino acid sequences of TFV gene products showed more than 90% identity to FV3, but a low degree of similarity among TFV, ISKNV, and LCDV-1. The results from this study indicated that TFV may belong to the genus Ranavirus of the family Iridoviridae.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Genome, Viral*
  • Humans
  • Iridoviridae / genetics
  • Iridovirus / classification*
  • Iridovirus / genetics*
  • Iridovirus / isolation & purification
  • Molecular Sequence Data
  • Open Reading Frames / genetics
  • Ranidae / virology*
  • Sequence Alignment
  • Sequence Analysis, DNA*
  • Viral Proteins / chemistry
  • Viral Proteins / genetics
  • Viral Proteins / metabolism

Substances

  • Viral Proteins

Associated data

  • GENBANK/AF389451