ENDscript: a workflow to display sequence and structure information

Bioinformatics. 2002 May;18(5):767-8. doi: 10.1093/bioinformatics/18.5.767.

Abstract

ENDscript is a web server grouping popular programs such as BLAST, Multalin and DSSP. It uses as query the co-ordinates file of a protein in Protein Data Bank format and generates PostScript and png figures showing: residues conserved after a multiple alignment against homologous sequences, secondary structure elements, accessibility, hydropathy and intermolecular contacts. Thus, the user can relate quickly 1D, 2D and 3D information of a protein of known structure.

Availability: http://genopole.toulouse.inra.fr/ENDscript

MeSH terms

  • Amino Acid Sequence
  • Data Display*
  • Database Management Systems*
  • Databases, Factual
  • Databases, Protein
  • Information Storage and Retrieval*
  • Internet*
  • Molecular Sequence Data
  • Proteins / chemistry
  • Proteins / genetics
  • Sequence Alignment
  • Sequence Analysis, Protein / methods*

Substances

  • Proteins