A genomic-scale view of the cAMP response element-enhancer decoy: a tumor target-based genetic tool

Proc Natl Acad Sci U S A. 2002 Nov 26;99(24):15626-31. doi: 10.1073/pnas.242617799. Epub 2002 Nov 18.

Abstract

Enhancer DNA decoy oligodeoxynucleotides (ODNs) inhibit transcription by competing for transcription factors. A decoy ODN composed of the cAMP response element (CRE) inhibits CRE-directed gene transcription and tumor growth without affecting normal cell growth. Here, we use DNA microarrays to analyze the global effects of the CRE-decoy ODN in cancer cell lines and in tumors grown in nude mice. The CRE-decoy up-regulates the AP-2beta transcription factor gene in tumors but not in the livers of host animals. The up-regulated expression of AP-2beta is clustered with the up-regulation of other genes involved in development and cell differentiation. Concomitantly, another cluster of genes involved in cell proliferation and transformation is down-regulated. The observed alterations indicate that CRE-directed transcription favors tumor growth. The CRE-decoy ODN, therefore, may serve as a target-based genetic tool to treat cancer and other diseases in which CRE-directed transcription is abnormally used.

MeSH terms

  • Adenocarcinoma / genetics*
  • Adenocarcinoma / pathology
  • Animals
  • Cell Cycle / drug effects
  • Cell Differentiation / genetics
  • CpG Islands
  • Cyclic AMP / physiology*
  • Cyclic AMP Response Element-Binding Protein / antagonists & inhibitors*
  • Cyclic AMP Response Element-Binding Protein / metabolism
  • DNA-Binding Proteins / biosynthesis
  • DNA-Binding Proteins / genetics
  • Enhancer Elements, Genetic*
  • Estradiol / pharmacology
  • Female
  • Gene Expression Profiling / methods*
  • Gene Expression Regulation, Neoplastic / drug effects*
  • Humans
  • Liver / drug effects
  • Liver / metabolism
  • Male
  • Mammary Glands, Animal
  • Mice
  • Mice, Nude
  • Molecular Mimicry
  • Neoplasm Proteins / genetics
  • Neoplasm Transplantation
  • Oligodeoxyribonucleotides / chemistry
  • Oligodeoxyribonucleotides / pharmacology*
  • Oligonucleotide Array Sequence Analysis*
  • Prostatic Neoplasms / genetics*
  • Prostatic Neoplasms / pathology
  • Second Messenger Systems / physiology*
  • Thionucleotides / chemistry
  • Thionucleotides / pharmacology*
  • Transcription Factor AP-2
  • Transcription Factors / biosynthesis
  • Transcription Factors / genetics
  • Transcription, Genetic / drug effects*
  • Transplantation, Heterotopic
  • Tumor Cells, Cultured

Substances

  • Cyclic AMP Response Element-Binding Protein
  • DNA-Binding Proteins
  • Neoplasm Proteins
  • Oligodeoxyribonucleotides
  • TFAP2B protein, human
  • Tfap2b protein, mouse
  • Thionucleotides
  • Transcription Factor AP-2
  • Transcription Factors
  • Estradiol
  • Cyclic AMP