The refined atomic structure of carbonic anhydrase II at 1.05 A resolution: implications of chemical rescue of proton transfer

Acta Crystallogr D Biol Crystallogr. 2003 Jan;59(Pt 1):93-104. doi: 10.1107/s0907444902019455. Epub 2002 Dec 19.

Abstract

Using synchrotron radiation and a CCD detector, X-ray data have been collected at 100 K for the His64Ala mutant of human carbonic anhydrase II complexed with 4-methylimidazole (4-MI) to a maximal 1.05 A resolution, allowing full anisotropic least-squares refinement. The refined model has a conventional R factor of 15.7% for all reflections. The C(alpha) coordinates of the model presented here have an r.m.s. deviation of 0.10 A relative to the previously determined structure at 1.6 A resolution. Several amino-acid residues (six of the 255 observed) have been identified with multiple rotamer side-chain conformations. C, N and O atoms can be differentiated with selective electron-density map contouring. The estimated standard deviations for all main-chain non-H atom bond lengths and angles are 0.013 and 0.030 A, respectively, based on unrestrained full-matrix least-squares refinement. This structure gives detailed information about the tetrahedrally arranged zinc ion coordinated by three histidine N atoms (His94 N(epsilon 2), His96 N(epsilon2) and His119 N(delta1)) and a water/hydroxide, the multiple binding sites of the proton chemical rescue molecule 4-MI and the solvent networks linking the zinc-bound water/hydroxide and 4-MI molecules. This structure presents the highest resolution structure of a carbonic anhydrase isozyme so far determined and adds to the understanding of proton-transfer processes.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Substitution
  • Binding Sites
  • Carbonic Anhydrase II / chemistry*
  • Carbonic Anhydrase II / genetics
  • Carbonic Anhydrase II / metabolism
  • Crystallography, X-Ray / methods
  • Cyclotrons
  • Histidine / genetics
  • Histidine / metabolism
  • Humans
  • Hydroxides / chemistry
  • Hydroxides / metabolism
  • Mercury / chemistry
  • Mercury / metabolism
  • Models, Molecular
  • Protein Conformation
  • Protons
  • Water / chemistry
  • Zinc / metabolism

Substances

  • Hydroxides
  • Protons
  • Water
  • Histidine
  • hydroxide ion
  • Carbonic Anhydrase II
  • Mercury
  • Zinc

Associated data

  • PDB/1MOO
  • PDB/R1MOOSF