A methodology to migrate the gene ontology to a description logic environment using DAML+OIL

Pac Symp Biocomput. 2003:624-35. doi: 10.1142/9789812776303_0058.

Abstract

The Gene Ontology Next Generation Project (GONG) is developing a staged methodology to evolve the current representation of the Gene Ontology into DAML+OIL in order to take advantage of the richer formal expressiveness and the reasoning capabilities of the underlying description logic. Each stage provides a step level increase in formal explicit semantic content with a view to supporting validation, extension and multiple classification of the Gene Ontology. The paper introduces DAML+OIL and demonstrates the activity within each stage of the methodology and the functionality gained.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Classification
  • Computational Biology*
  • Databases, Protein
  • Enzymes / chemistry
  • Enzymes / genetics
  • Genomics / statistics & numerical data*
  • Logistic Models
  • Proteomics / statistics & numerical data
  • Software
  • Terminology as Topic

Substances

  • Enzymes