[Identification of orthopoxvirus species using oligonucleotide micro-chips]

Vopr Virusol. 2003 Jan-Feb;48(1):4-9.
[Article in Russian]

Abstract

A method for describing the Orthopoxviruses that are pathogenic both to man and animals is described in the article. The method is based on hybridization of a fluorescently labelled amplified DNA sample with oligonucleotides, which were immobilized in a microchip. Species-specific regions within the crmB gene encoding a viral analogue of the tumor necrosis factor receptor, i.e. an important gene determining the pathogenicity of the mentioned Orthopoxviruses type, were used as a target for identification. The identification procedure takes around 6 hours and does not demand any costly equipment (a portable fluorescent microscope can be used).

Publication types

  • Comparative Study
  • English Abstract

MeSH terms

  • Animals
  • Base Sequence
  • DNA, Viral / analysis
  • Gene Expression Profiling
  • Humans
  • Molecular Sequence Data
  • Oligonucleotide Array Sequence Analysis / methods*
  • Oligonucleotide Probes
  • Orthopoxvirus / genetics
  • Orthopoxvirus / isolation & purification*
  • Orthopoxvirus / pathogenicity
  • Receptors, Tumor Necrosis Factor / genetics*
  • Sequence Alignment
  • Species Specificity
  • Viral Proteins / genetics*

Substances

  • DNA, Viral
  • Oligonucleotide Probes
  • Receptors, Tumor Necrosis Factor
  • Viral Proteins
  • crmB protein, Orthopoxvirus