Evidence for differential ribonucleoprotein complex assembly in vitro on the 5'-untranslated region of the human IGF-IR transcript

Mol Cell Endocrinol. 2003 Feb 28;200(1-2):127-40. doi: 10.1016/s0303-7207(02)00381-7.

Abstract

The type I insulin-like growth factor receptor (IGF-IR) plays a key role in the control of cellular proliferation and survival. The human IGF-IR transcript is characterized by an unusually long 1038 nucleotide 5'-untranslated region (5'-UTR). We hypothesized that the contribution of this complex 5'-untranslated RNA sequence to the post-transcriptional regulation of IGF-IR expression would involve a dynamic interplay between RNA structure and specific RNA-binding proteins. Here we have detected and characterized a diverse series of regulatory proteins binding the IGF-IR 5'-UTR under disparate conditions. One pair of proteins ( approximately 42/38 kDa) binds readily to the intact 5'-UTR, which is predicted to adopt a highly base-paired, highly favorable (dG=-498 kcal/mol) three-domain structure. Another protein(s) (p20*) specifically induces formation of a novel RNA structure from within the initial 209 nucleotides of the nascent IGF-IR transcript, but fails to UV crosslink to this RNA sequence. A third group of proteins recognizes and binds the IGF-IR 5'-UTR under highly stringent conditions, but only after higher-ordered RNA structure has been disrupted. Our in vitro results indicate that the IGF-IR 5'-UTR may exist in at least three distinct states, and we propose that interconversion between these states might take place in vivo and differentially alter IGF-IR transcript utilization.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • 5' Untranslated Regions / chemistry
  • 5' Untranslated Regions / metabolism*
  • Binding Sites
  • Humans
  • Macromolecular Substances
  • Models, Genetic
  • RNA-Binding Proteins / metabolism
  • Receptor, IGF Type 1 / biosynthesis
  • Receptor, IGF Type 1 / genetics*
  • Regulatory Sequences, Nucleic Acid
  • Ribonucleoproteins / metabolism*

Substances

  • 5' Untranslated Regions
  • Macromolecular Substances
  • RNA-Binding Proteins
  • Ribonucleoproteins
  • Receptor, IGF Type 1