Crystal structure of class I acetohydroxy acid isomeroreductase from Pseudomonas aeruginosa

J Mol Biol. 2003 Apr 25;328(2):505-15. doi: 10.1016/s0022-2836(03)00264-x.

Abstract

Acetohydroxy acid isomeroreductase (AHIR) is a key enzyme in the biosynthesis of branched-chain amino acids. We have determined the first crystal structure of a class I AHIR from Pseudomonas aeruginosa at 2.0 A resolution. Its dodecameric architecture of 23 point group symmetry is assembled of six dimeric units and dimerization is essential for the formation of the active site. The dimeric unit of P.aeruginosa AHIR partially superimposes with a three-domain monomer of spinach AHIR, a class II enzyme. This demonstrates that the so-called plant-specific insert in the middle of spinach AHIR is structurally and functionally equivalent to the C-terminal alpha-helical domain of P.aeruginosa AHIR, and the C-terminal alpha-helical domain was duplicated during evolution from the shorter, class I AHIRs to the longer, class II AHIRs. The dimeric unit of P.aeruginosa AHIR possesses a deep figure-of-eight knot, essentially identical with that in the spinach AHIR monomer. Thus, our work lowers the likelihood of the previous proposal that "domain duplication followed by exchange of a secondary structure element can be a source of such a knot in the protein structure" being correct.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alcohol Oxidoreductases / chemistry*
  • Alcohol Oxidoreductases / classification
  • Alcohol Oxidoreductases / genetics
  • Alcohol Oxidoreductases / metabolism
  • Amino Acid Sequence
  • Catalytic Domain
  • Conserved Sequence
  • Crystallography, X-Ray
  • Dimerization
  • Enzyme Inhibitors / metabolism
  • Evolution, Molecular
  • Ketol-Acid Reductoisomerase
  • Magnesium / metabolism
  • Models, Molecular
  • Molecular Sequence Data
  • NADP / metabolism
  • Protein Conformation
  • Protein Structure, Quaternary
  • Protein Structure, Tertiary
  • Pseudomonas aeruginosa / enzymology*
  • Pseudomonas aeruginosa / genetics
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Homology, Amino Acid
  • Static Electricity

Substances

  • Enzyme Inhibitors
  • Recombinant Proteins
  • NADP
  • Alcohol Oxidoreductases
  • Ketol-Acid Reductoisomerase
  • Magnesium

Associated data

  • PDB/1NP3