GoFish finds genes with combinations of Gene Ontology attributes

Gabriel F Berriz; James V White; Oliver D King; Frederick P Roth

doi:10.1093/bioinformatics/btg088

GoFish finds genes with combinations of Gene Ontology attributes

Bioinformatics. 2003 Apr 12;19(6):788-9. doi: 10.1093/bioinformatics/btg088.

Authors

Gabriel F Berriz¹, James V White, Oliver D King, Frederick P Roth

Affiliation

¹ Harvard Medical School, Department of Biological Chemistry and Molecular Pharmacology, 250 Longwood Avenue, Boston, MA 02115, USA.

PMID: 12691998
DOI: 10.1093/bioinformatics/btg088

Abstract

GoFish is a Java application that allows users to search for gene products with particular gene ontology (GO) attributes, or combinations of attributes. GoFish ranks gene products by the degree to which they satisfy a Boolean query. Four organisms are currently supported: Saccaromyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, and M.musculus.

Publication types

Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, P.H.S.

MeSH terms

Amino Acid Sequence
Gene Expression Profiling / methods*
Hypermedia*
Molecular Sequence Data
Phylogeny*
Proteomics / methods
Sequence Alignment / methods*
Sequence Analysis, Protein / methods*
Software*
User-Computer Interface*