ATP-induced conformational changes of the nucleotide-binding domain of Na,K-ATPase

Nat Struct Biol. 2003 Jun;10(6):468-74. doi: 10.1038/nsb924.

Abstract

The Na,K-ATPase hydrolyzes ATP to drive the coupled extrusion and uptake of Na+ and K+ ions across the plasma membrane. Here, we report two high-resolution NMR structures of the 213-residue nucleotide-binding domain of rat alpha1 Na,K-ATPase, determined in the absence and the presence of ATP. The nucleotide binds in the anti conformation and shows a relative paucity of interactions with the protein, reflecting the low-affinity ATP-binding state. Binding of ATP induces substantial conformational changes in the binding pocket and in residues located in the hinge region connecting the N- and P-domains. Structural comparison with the Ca-ATPase stabilized by the inhibitor thapsigargin, E2(TG), and the model of the H-ATPase in the E1 form suggests that the observed changes may trigger the series of events necessary for the release of the K+ ions and/or disengagement of the A-domain, leading to the eventual transfer of the gamma-phosphate group to the invariant Asp369.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptor Protein Complex 2 / metabolism
  • Adenosine Triphosphate / metabolism*
  • Amino Acid Sequence
  • Animals
  • Binding Sites
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Molecular Sequence Data
  • Nucleotides / metabolism*
  • Protease Inhibitors / chemistry
  • Protease Inhibitors / metabolism
  • Protein Conformation
  • Rats
  • Sequence Homology, Amino Acid
  • Sodium-Potassium-Exchanging ATPase / chemistry*
  • Sodium-Potassium-Exchanging ATPase / genetics
  • Sodium-Potassium-Exchanging ATPase / metabolism*
  • Thapsigargin / chemistry
  • Thapsigargin / metabolism

Substances

  • Adaptor Protein Complex 2
  • Nucleotides
  • Protease Inhibitors
  • Thapsigargin
  • Adenosine Triphosphate
  • Sodium-Potassium-Exchanging ATPase

Associated data

  • PDB/1EUL
  • PDB/1IWO
  • PDB/1MO7
  • PDB/1MO8