Methylation of adjacent CpG sites affects Sp1/Sp3 binding and activity in the p21(Cip1) promoter

Mol Cell Biol. 2003 Jun;23(12):4056-65. doi: 10.1128/MCB.23.12.4056-4065.2003.

Abstract

DNA methylation in the promoter of certain genes is associated with transcriptional silencing. Methylation affects gene expression directly by interfering with transcription factor binding and/or indirectly by recruiting histone deacetylases through methyl-DNA-binding proteins. In this study, we demonstrate that the human lung cancer cell line H719 lacks p53-dependent and -independent p21(Cip1) expression. p53 response to treatment with gamma irradiation or etoposide is lost due to a mutation at codon 242 of p53 (C-->W). Treatment with depsipeptide, an inhibitor of histone deacetylase, was unable to induce p53-independent p21(Cip1) expression because the promoter of p21(Cip1) in these cells is hypermethylated. By analyzing luciferase activity of transfected p21(Cip1) promoter vectors, we demonstrate that depsipeptide functions on Sp1-binding sites to induce p21(Cip1) expression. We hypothesize that hypermethylation may interfere with Sp1/Sp3 binding. By using an electrophoretic mobility shift assay, we show that, although methylation within the consensus Sp1-binding site did not reduce Sp1/Sp3 binding, methylation outside of the consensus Sp1 element induced a significant decrease in Sp1/Sp3 binding. Depsipeptide induced p21(Cip1) expression was reconstituted when cells were pretreated with 5-aza-2'-deoxycytidine. Our data suggest, for the first time, that hypermethylation around the consensus Sp1-binding sites may directly reduce Sp1/Sp3 binding, therefore leading to a reduced p21(Cip1) expression in response to depsipeptide treatment.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Binding Sites*
  • Blotting, Northern
  • Cell Line
  • Cell Nucleus / metabolism
  • Codon
  • CpG Islands*
  • Cyclin-Dependent Kinase Inhibitor p21
  • Cyclins / genetics*
  • DNA Methylation*
  • Depsipeptides*
  • Dose-Response Relationship, Drug
  • Etoposide / pharmacology
  • Flow Cytometry
  • Genes, p53 / genetics
  • Humans
  • Immunoblotting
  • Luciferases / metabolism
  • Lung / cytology
  • Methylation*
  • Models, Genetic
  • Molecular Sequence Data
  • Mutation
  • Peptides / chemistry
  • Peptides, Cyclic / pharmacology
  • Polymerase Chain Reaction
  • Promoter Regions, Genetic*
  • Protein Binding
  • Sodium Oxybate / pharmacology
  • Transfection
  • Tumor Cells, Cultured

Substances

  • CDKN1A protein, human
  • Codon
  • Cyclin-Dependent Kinase Inhibitor p21
  • Cyclins
  • Depsipeptides
  • Peptides
  • Peptides, Cyclic
  • Etoposide
  • Sodium Oxybate
  • romidepsin
  • Luciferases