On the complete determination of biological systems

Trends Biotechnol. 2003 Jun;21(6):251-4. doi: 10.1016/S0167-7799(03)00113-6.

Abstract

The nascent field of systems biology ambitiously proposes to integrate information from large-scale biology projects to create computational models that are, in some sense, complete. However, the details of what would constitute a complete systems-level model of an organism are far from clear. To provide a framework for this difficult question it is useful to define a model as a set of rules that maps a set of inputs (e.g. descriptions of the cell's environment) to a set of outputs (e.g. the concentrations of all its RNAs and proteins). We show how the properties of a model affect the required experimental sampling and estimate the number of experiments needed to "complete" a particular model. Based on these estimates, we suggest that the complete determination of a biological system is a concrete, achievable goal.

Publication types

  • Comparative Study

MeSH terms

  • Cell Physiological Phenomena*
  • Combinatorial Chemistry Techniques*
  • Computer Simulation*
  • Escherichia coli / physiology
  • Gene Expression Regulation / physiology
  • Humans
  • Metabolism / physiology*
  • Models, Biological*
  • Mycoplasma pneumoniae / physiology
  • Proteome / physiology
  • Proteomics / methods*
  • Reproducibility of Results
  • Research Design*
  • Sensitivity and Specificity
  • Species Specificity
  • Systems Theory

Substances

  • Proteome