Enzymatic incorporation of an unnatural base pair between 4-propynyl-pyrrole-2-carbaldehyde and 9-methyl-imidazo [(4,5)-b]pyridine into nucleic acids

Nucleic Acids Res Suppl. 2002:(2):219-20. doi: 10.1093/nass/2.1.219.

Abstract

A hydrophobic unnatural nucleoside of 4-propynylpyrrole-2-carbaldehyde (designated as Pa') was synthesized to improve its affinity with a pairing partner, 9-methyl-imidazo[(4,5)-b]pyridine (Q), in enzymatic incorporation. In single-nucleotide insertion experiments using the Klenow fragment, the substrate of Pa' (dPa'TP) was efficiently incorporated opposite Q in the template strand, as compared to the incorporation of pyrrole-2-carbaldehyde (dPaTP), which was previously developed.

MeSH terms

  • Base Pairing*
  • Imidazoles / chemistry*
  • Nucleic Acids / chemistry*
  • Pyridines / chemistry*
  • Pyrroles / chemistry*

Substances

  • 4-propynylpyrrole-2-carbaldehyde
  • 9-methylimidazo((4,5)-b)pyridine
  • Imidazoles
  • Nucleic Acids
  • Pyridines
  • Pyrroles