A comprehensive classification of nucleic acid structural families based on strand direction and base pairing

Nucleic Acids Res. 1992 Oct 11;20(19):5011-6. doi: 10.1093/nar/20.19.5011.

Abstract

We propose a classification of DNA structures formed from 1 to 4 strands, based only on relative strand directions, base to strand orientation and base pairing geometries. This classification and its associated notation enable all nucleic acids to be grouped into structural families and bring to light possible structures which have not yet been observed experimentally. It also helps in understanding transitions between families and can assist in the design of multistrand structures.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Composition*
  • DNA / chemistry*
  • DNA / classification
  • Models, Structural
  • Nucleic Acid Conformation*
  • RNA / chemistry*

Substances

  • RNA
  • DNA