Evidence that the packaging signal for nodaviral RNA2 is a bulged stem-loop

Proc Natl Acad Sci U S A. 1992 Dec 1;89(23):11146-50. doi: 10.1073/pnas.89.23.11146.

Abstract

Flock house virus is an insect virus belonging to the family Nodaviridae; members of this family are characterized by a small bipartite positive-stranded RNA genome. The larger genomic segment, RNA1, encodes viral replication proteins, whereas the smaller one, RNA2, encodes coat protein. Both RNAs are packaged in a single particle. A defective-interfering RNA (DI-634), isolated from a line of Drosophila cells persistently infected with Flock house virus, was used to show that a 32-base region of RNA2 (bases 186-217) is required for packaging into virions. RNA folding analysis predicted that this region forms a stem-loop structure with a 5-base loop and a 13-base-pair bulged stem.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Capsid / metabolism
  • Hydrogen Bonding
  • Insect Viruses / metabolism*
  • Insect Viruses / ultrastructure
  • Molecular Sequence Data
  • Morphogenesis
  • Nucleic Acid Conformation
  • RNA, Viral / genetics
  • RNA, Viral / metabolism*
  • RNA, Viral / ultrastructure
  • Sequence Deletion
  • Structure-Activity Relationship
  • Virus Replication

Substances

  • RNA, Viral