High resolution HLA-DRB1 identification of a Caucasian population

Hum Immunol. 2004 Jan;65(1):66-77. doi: 10.1016/j.humimm.2003.10.004.

Abstract

Polymerase chain reaction-sequence-specific oligonucleotide probes typing methods have been applied to 1000 individuals from the Northern Ireland population to give human leukocyte antigen DRB1 (HLA-DRB1) allele assignment. HLA-DRB1 allele frequencies and four-locus haplotypes (A/B/C/DR) for this Caucasian population, based on HLA class I and class II allele assignment, are now presented. No significant deviations from Hardy-Weinberg proportions were observed. The HLA-C locus exhibited marginal evidence of selection (p<0.03, uncorrected one-sided test) in the direction of balancing selection; the HLA-A, -B, and -DRB1 allele frequency distributions were compatible with expectations under a neutral model (which does not mean that selection is not operating). Evidence for selection was seen on haplotypes HLA-A*010101-B*0801-DRB1*030101 and HLA-A*290201-B*440301-DRB1*070101 based on their patterns of linkage disequilibrium.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Alleles
  • Codon / genetics
  • England / ethnology
  • Ethnicity / genetics*
  • Gene Frequency
  • Genes, MHC Class II
  • HLA-DR Antigens / analysis*
  • HLA-DR Antigens / genetics
  • HLA-DRB1 Chains
  • Histocompatibility Testing / methods*
  • Humans
  • Linkage Disequilibrium
  • Luminescent Measurements
  • Models, Genetic
  • Northern Ireland
  • Oligonucleotide Probes
  • Polymerase Chain Reaction / methods*
  • Scotland / ethnology
  • White People / genetics*

Substances

  • Codon
  • HLA-DR Antigens
  • HLA-DRB1 Chains
  • Oligonucleotide Probes