Cyclic PNA-based compound directed against HIV-1 TAR RNA: modelling, liquid-phase synthesis and TAR binding

Org Biomol Chem. 2004 Jan 7;2(1):74-9. doi: 10.1039/b311775h. Epub 2003 Nov 27.

Abstract

A cyclic molecule including a hexameric PNA sequence has been designed and synthesized in order to target the TAR RNA loop of HIV-1 through the formation of a "kissing complex". For comparison, its linear analogue has also been investigated. The synthesis of the cyclic and linear PNA has been accomplished following a liquid-phase strategy using mixed PNA and fully N-protected (aminoethylglycinamide) fragments. The interactions of this cyclic PNA and its linear analogue with TAR RNA have been studied and the results indicate clearly that no interaction occurs between the cyclic antisense PNA and TAR RNA, whereas a tenuous interaction has been detected with its linear PNA analogue.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cyclization
  • Drug Design
  • HIV Long Terminal Repeat*
  • HIV-1 / genetics*
  • Humans
  • Models, Molecular
  • Nucleic Acids / chemical synthesis
  • Nucleotides, Cyclic / chemical synthesis
  • Nylons / chemical synthesis
  • Nylons / pharmacology
  • RNA, Viral / chemistry
  • RNA, Viral / metabolism
  • Transition Temperature

Substances

  • Nucleic Acids
  • Nucleotides, Cyclic
  • Nylons
  • RNA, Viral