Crystallization and preliminary X-ray diffraction analysis of a dihaem cytochrome c peroxidase from Paracoccus denitrificans

Acta Crystallogr D Biol Crystallogr. 2004 Feb;60(Pt 2):331-3. doi: 10.1107/S0907444903026519. Epub 2004 Jan 23.

Abstract

Cytochrome c peroxidase was isolated from Paracoccus denitrificans and purified to homogeneity in three steps prior to crystallization. Two different diffraction-quality crystal forms were obtained by the hanging-drop vapour-diffusion method using a number of screening conditions. The best (needle-shaped) crystal form is suitable for structural studies and was grown from solutions containing 20% PEG 8000, 0.1 M Tris pH 8.5 and 0.2 M MgCl(2). Crystals grew to a maximum length of approximately 0.7 mm and belong to the primitive monoclinic space group P2(1), with unit-cell parameters a = 78.3, b = 51.0, c = 167.2 A, beta = 97.9 degrees. After a dehydration step and extensive optimization of the cryocooling conditions, a complete data set was collected to 2.2 A from a native crystal of the fully oxidized form of the enzyme using synchrotron radiation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Crystallography
  • Cytochrome-c Peroxidase / chemistry*
  • Heme / chemistry*
  • Oxygen / metabolism
  • Paracoccus denitrificans / enzymology*
  • Polyethylene Glycols / chemistry
  • Protein Conformation
  • Synchrotrons
  • Temperature
  • Time Factors
  • X-Ray Diffraction

Substances

  • Polyethylene Glycols
  • Heme
  • Cytochrome-c Peroxidase
  • Oxygen