Sequence analysis of a rainbow trout cDNA library and creation of a gene index

Cytogenet Genome Res. 2003;102(1-4):347-54. doi: 10.1159/000075773.

Abstract

Expressed sequence tag (EST) projects have produced extremely valuable resources for identifying genes affecting phenotypes of interest. A large-scale EST sequencing project for rainbow trout was initiated to identify and functionally annotate as many unique transcripts as possible. Over 45,000 5' ESTs were obtained by sequencing clones from a single normalized library constructed using mRNA from six tissues. The production of this sequence data and creation of a rainbow trout Gene Index eliminating redundancy and providing annotation for these sequences will facilitate research in this species.

Publication types

  • Comparative Study

MeSH terms

  • Animals
  • Arabidopsis / genetics
  • Catfishes / genetics
  • Cattle
  • Chickens / genetics
  • Cluster Analysis
  • DNA, Complementary / genetics*
  • DNA, Plant / genetics
  • Databases, Genetic / statistics & numerical data
  • Databases, Genetic / trends*
  • Expressed Sequence Tags
  • Gene Library*
  • Genes / genetics*
  • Genes / physiology
  • Genes, Plant / genetics
  • Genes, Plant / physiology
  • Humans
  • Mice
  • Molecular Sequence Data
  • Oncorhynchus mykiss / genetics*
  • Rats
  • Sequence Analysis, DNA / statistics & numerical data
  • Sequence Analysis, DNA / veterinary*
  • Swine / genetics
  • Zebrafish / genetics

Substances

  • DNA, Complementary
  • DNA, Plant

Associated data

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