Functional and biochemical characterization of a recombinant Arabidopsis thaliana 3-deoxy-D-manno-octulosonate 8-phosphate synthase

Biochem J. 2004 Jul 1;381(Pt 1):185-93. doi: 10.1042/BJ20040207.

Abstract

An open reading frame, encoding for KDOPS (3-deoxy-D-manno-octulosonate 8-phosphate synthase), from Arabidopsis thaliana was cloned into a T7-driven expression vector. The protein was overexpressed in Escherichia coli and purified to homogeneity. Recombinant A. thaliana KDOPS, in solution, displays an apparent molecular mass of 76 kDa and a subunit molecular mass of 31.519 kDa. Unlike previously studied bacterial KDOPSs, which are tetrameric, A. thaliana KDOPS appears to be a dimer in solution. The optimum temperature of the enzyme is 65 degrees C and the optimum pH is 7.5, with a broad peak between pH 6.5 and 9.5 showing 90% of maximum activity. The enzyme cannot be inactivated by EDTA or dipicolinic acid treatment, nor it can be activated by a series of bivalent metal ions, suggesting that it is a non-metallo-enzyme, as opposed to the initial prediction that it would be a metallo-enzyme. Kinetic studies showed that the enzyme follows a sequential mechanism with K(m)=3.6 microM for phosphoenolpyruvate and 3.8 microM for D-arabinose 5-phosphate and kcat=5.9 s(-1) at 37 degrees C. On the basis of the characterization of A. thaliana KDOPS and phylogenetic analysis, plant KDOPSs may represent a new, distinct class of KDOPSs.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • 3-Deoxy-7-Phosphoheptulonate Synthase / chemistry*
  • 3-Deoxy-7-Phosphoheptulonate Synthase / genetics
  • 3-Deoxy-7-Phosphoheptulonate Synthase / metabolism*
  • Amino Acid Sequence
  • Arabidopsis / enzymology
  • Arabidopsis Proteins / chemistry
  • Arabidopsis Proteins / genetics
  • Arabidopsis Proteins / metabolism
  • Bacterial Proteins / chemistry
  • Cloning, Molecular
  • Enzyme Stability
  • Hydrogen-Ion Concentration
  • Metals / chemistry
  • Metals / metabolism
  • Molecular Sequence Data
  • Molecular Weight
  • Open Reading Frames
  • Plant Proteins / chemistry
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Alignment / methods
  • Substrate Specificity
  • Sugar Acids
  • Sugar Phosphates / biosynthesis
  • Temperature

Substances

  • 3-deoxy-manno-octulosonate-8-phosphate
  • Arabidopsis Proteins
  • Bacterial Proteins
  • Metals
  • Plant Proteins
  • Recombinant Proteins
  • Sugar Acids
  • Sugar Phosphates
  • 3-Deoxy-7-Phosphoheptulonate Synthase