Identification of an alternate delta-globin mRNA in adult human erythroid cells

Genomics. 2004 Aug;84(2):431-4. doi: 10.1016/j.ygeno.2004.04.009.

Abstract

Here we describe the identification and characterization of an alternate delta-globin mRNA (Alt-d) discovered during high-throughput sequencing of mRNA from adult human erythroid cells. Alt-d mRNA shares the same coding region, splicing pattern, downstream untranslated region, and site of polyadenylation with the previously defined delta-globin (Delta) mRNA. Alt-d mRNA encodes an additional 145 nt in the upstream untranslated region, suggesting an alternative site of transcriptional initiation and transcription through the previously defined promoter, which contains several protein-binding motifs and a TATA box. Northern blot and PCR analyses demonstrated a restricted expression of Alt-d in fetal liver, bone marrow, and adult reticulocytes. Quantitative PCR demonstrated an Alt-d expression pattern similar to that of the Delta transcripts. In addition to intergenic RNA species and the dominant delta-globin transcripts, these data suggest that a third form of RNA is produced from low-level transcription through the delta-globin gene promoter.

MeSH terms

  • 5' Untranslated Regions / genetics*
  • 5' Untranslated Regions / metabolism
  • Adult
  • Bone Marrow / metabolism
  • Brain / metabolism
  • Cell Line
  • Erythroid Cells / metabolism*
  • Globins / genetics*
  • Humans
  • Liver / metabolism
  • Molecular Sequence Data
  • Promoter Regions, Genetic / genetics
  • RNA Splicing / genetics
  • Reverse Transcriptase Polymerase Chain Reaction
  • Salivary Glands / metabolism
  • Transcription Initiation Site*

Substances

  • 5' Untranslated Regions
  • Globins

Associated data

  • GENBANK/AY034468