A second-generation system for unbiased reading frame selection

Protein Eng Des Sel. 2004 Jul;17(7):595-602. doi: 10.1093/protein/gzh068. Epub 2004 Aug 25.

Abstract

Reading frame selection of nucleic acids has important implications for protein engineering and genomics. Current methods are limited because selection of the gene of interest inevitably depends on the solubility of its translated product. Here we report the construction of the pInSALect vector, which provides strict reading frame selection without concomitant selection for protein solubility or folding. This plasmid incorporates the cis-splicing VMA intein sequence from Saccharomyces cerevisiae to facilitate the post-translational self-excision of the protein of interest, thereby eliminating potential aggregation problems. Results from two libraries of chimeric glycinamide ribonucleotide formyltransferases confirm the superior performance of pInSALect over existing reading frame selection systems.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Chloramphenicol O-Acetyltransferase / metabolism
  • Drosophila melanogaster
  • Escherichia coli / metabolism
  • Gene Library
  • Genetic Vectors
  • Genomics / methods*
  • Hydroxymethyl and Formyl Transferases / chemistry
  • Inteins
  • Models, Molecular
  • Mutagenesis
  • Peptide Library
  • Phosphoribosylglycinamide Formyltransferase
  • Plasmids / metabolism
  • Protein Conformation
  • Protein Engineering / methods*
  • Protein Folding
  • Protein Processing, Post-Translational
  • Protein Structure, Secondary
  • Reading Frames*
  • Saccharomyces cerevisiae / metabolism
  • Software

Substances

  • Peptide Library
  • Hydroxymethyl and Formyl Transferases
  • Phosphoribosylglycinamide Formyltransferase
  • Chloramphenicol O-Acetyltransferase