Ionic effect on combing of single DNA molecules and observation of their force-induced melting by fluorescence microscopy

J Chem Phys. 2004 Sep 1;121(9):4302-9. doi: 10.1063/1.1777220.

Abstract

Molecular combing is a powerful and simple method for aligning DNA molecules onto a surface. Using this technique combined with fluorescence microscopy, we observed that the length of lambda-DNA molecules was extended to about 1.6 times their contour length (unextended length, 16.2 microm) by the combing method on hydrophobic polymethylmetacrylate coated surfaces. The effects of sodium and magnesium ions and pH of the DNA solution were investigated. Interestingly, we observed force-induced melting of single DNA molecules.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteriophage lambda / chemistry
  • Biomechanical Phenomena
  • DNA, Viral / chemistry*
  • Hydrogen-Ion Concentration
  • Hydrophobic and Hydrophilic Interactions*
  • Magnesium / chemistry
  • Microscopy, Fluorescence
  • Nucleic Acid Conformation*
  • Phase Transition*
  • Polymethyl Methacrylate / chemistry
  • Sodium / chemistry
  • Surface Properties

Substances

  • DNA, Viral
  • Polymethyl Methacrylate
  • Sodium
  • Magnesium