DNA-looping by RXR tetramers permits transcriptional regulation "at a distance"

J Mol Biol. 2004 Oct 15;343(2):327-38. doi: 10.1016/j.jmb.2004.08.070.

Abstract

RXR, a member of the superfamily of nuclear hormone receptors, regulates gene transcription in response to 9-cis-retinoic acid. We previously showed that, among nuclear receptors, RXR is unique in that it self-associates into homotetramers, and that these tetramers dissociate rapidly upon ligation. Here, we report that binding of RXR tetramers to DNA containing two RXR response elements results in a dramatic DNA-looping. RXR can thus juxtapose distant DNA sequences, enabling transcriptional regulation by far-upstream factors. We show that RXR functions as a DNA architectural factor and that, while this activity is regulated by 9-cis-retinoic acid, it is distinct from and independent of the receptor's intrinsic transcriptional activity. The data establish RXR as the first identified architectural factor whose activity is regulated by a small ligand, and demonstrate a novel mechanism of transcriptional regulation by retinoids.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • COS Cells
  • Chlorocebus aethiops
  • DNA / chemistry*
  • DNA / metabolism
  • DNA / ultrastructure
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / metabolism
  • Gene Expression Regulation*
  • Macromolecular Substances
  • Molecular Sequence Data
  • Molecular Weight
  • Nucleic Acid Conformation*
  • Protein Structure, Quaternary*
  • Receptors, Retinoic Acid / chemistry*
  • Receptors, Retinoic Acid / metabolism
  • Receptors, Retinoic Acid / ultrastructure
  • Regulatory Sequences, Nucleic Acid
  • Retinoid X Receptors
  • Retinoids / metabolism
  • Transcription Factors / chemistry*
  • Transcription Factors / metabolism
  • Transcription Factors / ultrastructure
  • Transcription, Genetic*

Substances

  • DNA-Binding Proteins
  • Macromolecular Substances
  • Receptors, Retinoic Acid
  • Retinoid X Receptors
  • Retinoids
  • Transcription Factors
  • DNA