An integrated approach to the detection of colorectal cancer utilizing proteomics and bioinformatics

World J Gastroenterol. 2004 Nov 1;10(21):3127-31. doi: 10.3748/wjg.v10.i21.3127.

Abstract

Aim: To find new potential biomarkers and to establish patterns for early detection of colorectal cancer.

Methods: One hundred and eighty-two serum samples including 55 from colorectal cancer (CRC) patients, 35 from colorectal adenoma (CRA) patients and 92 from healthy persons (HP) were detected by surface-enhanced laser desorption/ionization mass spectrometry (SELDI-MS). The data of spectra were analyzed by bioinformatics tools like artificial neural network (ANN) and support vector machine (SVM).

Results: The diagnostic pattern combined with 7 potential biomarkers could differentiate CRC patients from CRA patients with a specificity of 83%, sensitivity of 89% and positive predictive value of 89%. The diagnostic pattern combined with 4 potential biomarkers could differentiate CRC patients from HP with a specificity of 92%, sensitivity of 89% and positive predictive value of 86%.

Conclusion: The combination of SELDI with bioinformatics tools could help find new biomarkers and establish patterns with high sensitivity and specificity for the detection of CRC.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers, Tumor
  • Colorectal Neoplasms / diagnosis*
  • Computational Biology*
  • Humans
  • Mass Spectrometry / methods
  • Protein Array Analysis
  • Proteomics*

Substances

  • Biomarkers, Tumor