Hydrogenivirga caldilitoris gen. nov., sp. nov., a novel extremely thermophilic, hydrogen- and sulfur-oxidizing bacterium from a coastal hydrothermal field

Int J Syst Evol Microbiol. 2004 Nov;54(Pt 6):2079-2084. doi: 10.1099/ijs.0.03031-0.

Abstract

A novel extremely thermophilic, hydrogen- and sulfur-oxidizing bacterium, designated strain IBSK3(T), was isolated from a coastal hot spring in Ibusuki, Kagoshima Prefecture, Japan. The cells were motile, straight to slightly curved rods (1.2-3.0 microm long and 0.3-0.4 microm wide). Strain IBSK3(T) was an obligate chemolithoautotroph growing by respiratory nitrate reduction with H(2), forming N(2)O as an end product. Low concentrations of O(2) (0.4-7.7 %, v/v; optimum 2.0 %, v/v) could serve as an alternative electron acceptor to growth. In addition, strain IBSK3(T) was able to utilize elemental sulfur as a sole electron donor with either nitrate or low concentrations of O(2) as an electron acceptor. Growth was observed between 55 and 77.5 degrees C (optimum 75 degrees C; 2 h doubling time), pH 5.5 and 8.3 (optimum pH 6.5-7.0), and in the presence of 0.5 and 4.0 % NaCl (optimum 2.0 %). The G+C content of the genomic DNA was 49.2 mol%. On the basis of 16S rRNA gene sequence analysis, strain IBSK3(T) belonged to the family Aquificaceae, but it only demonstrated a distant phylogenetic relationship with any recognized species within the family (sequence similarity was less than 92 %). On the basis of the physiological and molecular characteristics of the novel isolate, a new genus and novel species are proposed: the type strain of Hydrogenivirga caldilitoris gen. nov., sp. nov. is IBSK3(T) (=JCM 12173(T)=ATCC BAA-821(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Composition
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / isolation & purification
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / isolation & purification
  • Genes, rRNA
  • Gram-Negative Bacteria / classification*
  • Gram-Negative Bacteria / cytology
  • Gram-Negative Bacteria / isolation & purification*
  • Gram-Negative Bacteria / metabolism
  • Hot Springs / microbiology*
  • Hot Temperature
  • Hydrogen / metabolism*
  • Hydrogen-Ion Concentration
  • Inorganic Chemicals / metabolism
  • Japan
  • Molecular Sequence Data
  • Movement
  • Nitrates / metabolism
  • Nitrous Oxide / metabolism
  • Oxidation-Reduction
  • Oxygen / metabolism
  • Phylogeny
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Saline Solution, Hypertonic
  • Sequence Analysis, DNA
  • Sulfur / metabolism*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Inorganic Chemicals
  • Nitrates
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Saline Solution, Hypertonic
  • Sulfur
  • Hydrogen
  • Nitrous Oxide
  • Oxygen

Associated data

  • GENBANK/AB120294