Of orphons and UHOs. Delimitation of the germline repertoire of human immunoglobulin kappa genes

Biol Chem Hoppe Seyler. 1992 Apr;373(4):177-86. doi: 10.1515/bchm3.1992.373.1.177.

Abstract

Two problems in defining the germline repertoire of immunoglobulin kappa genes were investigated. One concerns putative transposed V kappa genes (orphons), the other one weak hybridization signals which may or may not turn out to be V kappa genes (UHOs). It was shown by sequencing that the three V kappa genes Z2, Z3 and Z4 are very closely related to the Z1 and V118 genes and to two other genes which had been localized on chromosomes 1 and 22, i.e. outside the kappa locus on chromosome 2. It is therefore likely that also the Z2-Z4 genes are orphons and not part of the kappa locus. Two UHOs turned out not to contain V kappa-like structures. This together with previous results makes it likely that we have detected all germline V kappa genes with the available hybridization probes.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Biological Evolution
  • Chromosome Mapping
  • Cloning, Molecular
  • Cosmids
  • Genes, Immunoglobulin*
  • Germ Cells / chemistry*
  • Humans
  • Immunoglobulin Variable Region / genetics
  • Immunoglobulin kappa-Chains / genetics*
  • Molecular Sequence Data
  • Recombination, Genetic*
  • Sequence Homology, Nucleic Acid

Substances

  • Immunoglobulin Variable Region
  • Immunoglobulin kappa-Chains

Associated data

  • GENBANK/M91429
  • GENBANK/M91430
  • GENBANK/M93301
  • GENBANK/X64633
  • GENBANK/X64634
  • GENBANK/X64635
  • GENBANK/X64636
  • GENBANK/X64637
  • GENBANK/X64638
  • GENBANK/X64639
  • GENBANK/X64640
  • GENBANK/X64641
  • GENBANK/X64642