Phenylacetate catabolism in Rhodococcus sp. strain RHA1: a central pathway for degradation of aromatic compounds

J Bacteriol. 2005 Jul;187(13):4497-504. doi: 10.1128/JB.187.13.4497-4504.2005.

Abstract

In gram-negative bacteria, a pathway for aerobic degradation of phenylacetic acid (PAA) that proceeds via phenylacetyl-coenzyme A (CoA) and hydrolytic ring fission plays a central role in the degradation of a range of aromatic compounds. In contrast, the PAA pathway and its role are not well characterized in gram-positive bacteria. A cluster including 13 paa genes encoding enzymes orthologous to those of gram-negative bacteria was identified on the chromosome of Rhodococcus sp. strain RHA1. These genes were transcribed during growth on PAA, with 11 of the genes apparently in an operon yielding a single transcript. Quantitative proteomic analyses revealed that at least 146 proteins were more than twice as abundant in PAA-grown cells of RHA1 than in pyruvate-grown cells. Of these proteins, 29 were identified, including 8 encoded by the paa genes. Knockout mutagenesis indicated that paaN, encoding a putative ring-opening enzyme, was essential for growth on PAA. However, paaF, encoding phenylacetyl-CoA ligase, and paaR, encoding a putative regulator, were not essential. paaN was also essential for growth of RHA1 on phenylacetaldehyde, phenylpyruvate, 4-phenylbutyrate, 2-phenylethanol, 2-phenylethylamine, and l-phenylalanine. In contrast, growth on 3-hydroxyphenylacetate, ethylbenzene, and styrene was unaffected. These results suggest that the range of substrates degraded via the PAA pathway in RHA1 is somewhat limited relative to the range in previously characterized gram-negative bacteria.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetaldehyde / analogs & derivatives*
  • Acetaldehyde / metabolism
  • Chromosomes, Bacterial
  • Electrophoresis, Gel, Two-Dimensional
  • GTP Cyclohydrolase / genetics
  • Genes, Bacterial
  • Multigene Family
  • Phenethylamines / metabolism
  • Phenylacetates / metabolism*
  • Phenylalanine / metabolism
  • Phenylbutyrates / metabolism
  • Phenylethyl Alcohol / metabolism
  • Phenylpyruvic Acids / metabolism
  • Proteome / analysis
  • Proteome / metabolism
  • Rhodococcus / genetics
  • Rhodococcus / metabolism*

Substances

  • Phenethylamines
  • Phenylacetates
  • Phenylbutyrates
  • Phenylpyruvic Acids
  • Proteome
  • phenethylamine
  • Phenylalanine
  • 4-phenylbutyric acid
  • GTP Cyclohydrolase
  • phenylacetic acid
  • Acetaldehyde
  • Phenylethyl Alcohol
  • phenylacetaldehyde
  • phenylpyruvic acid