HnRNP L represses exon splicing via a regulated exonic splicing silencer

EMBO J. 2005 Aug 3;24(15):2792-802. doi: 10.1038/sj.emboj.7600745. Epub 2005 Jul 7.

Abstract

Skipping of mammalian exons during pre-mRNA splicing is commonly mediated by the activity of exonic splicing silencers (ESSs). We have recently identified a regulated ESS within variable exon 4 of the CD45 gene, named ESS1, that is necessary and sufficient for partial exon repression in resting T cells and has additional silencing activity upon T-cell activation. In this study, we identify three heterogeneous nuclear ribonucleoproteins (hnRNPs) that bind specifically to ESS1. The binding of one of these proteins, hnRNP-L, is significantly decreased by mutations that disrupt both the basal and induced activities of ESS1. Recombinant hnRNP-L functions to repress exon inclusion in vitro in an ESS1-dependent manner. Moreover, depletion of hnRNP-L, either in vitro or in vivo, leads to increased exon inclusion. In contrast, the other ESS1-binding proteins, PTB and hnRNP E2, do not discriminate between wild-type and mutant ESS1 in binding studies, and do not specifically alter ESS1-dependent splicing in vitro. Together, these studies demonstrate that hnRNP-L is the primary protein through which CD45 exon 4 silencing is mediated by the regulatory sequence ESS1.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • Exons / physiology*
  • Heterogeneous-Nuclear Ribonucleoprotein L / metabolism
  • Heterogeneous-Nuclear Ribonucleoprotein L / physiology*
  • Humans
  • Leukocyte Common Antigens / genetics
  • Molecular Sequence Data
  • Polypyrimidine Tract-Binding Protein / metabolism
  • RNA Splicing / physiology*
  • Repressor Proteins / genetics
  • Repressor Proteins / physiology
  • Silencer Elements, Transcriptional / physiology*

Substances

  • Heterogeneous-Nuclear Ribonucleoprotein L
  • Repressor Proteins
  • Polypyrimidine Tract-Binding Protein
  • Leukocyte Common Antigens