Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana

J Biochem Mol Biol. 2005 Jul 31;38(4):440-6. doi: 10.5483/bmbrep.2005.38.4.440.

Abstract

A cDNA that was rapidly induced upon abscisic acid, cold, drought, mechanical wounding and to a lesser extent, by high salinity treatment, was isolated from Arabidopsis seedlings. It was classified as DREB subfamily member based on multiple sequence alignment and phylogenetic characterization. Since it encoded a protein with a typical ERF/AP2 DNA-binding domain and was closely related to the TINY gene, we named it TINY2. Gel retardation assay revealed that TINY2 was able to form a specific complex with the previously characterized DRE element while showed only residual affinity to the GCC box. When fused to the GAL4 DNA-binding domain, either full-length or its C-terminus functioned effectively as a trans-activator in the yeast one-hybrid assay while its N-terminus was completely inactive. Our data indicate that TINY2 could be a new member of the AP2/EREBP transcription factor family involved in activation of down-stream genes in response to environmental stress.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Abscisic Acid / pharmacology
  • Amino Acid Sequence
  • Arabidopsis
  • Arabidopsis Proteins / genetics*
  • Arabidopsis Proteins / metabolism*
  • Cloning, Molecular
  • Cold Temperature
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / metabolism*
  • Electrophoretic Mobility Shift Assay
  • Gene Expression Profiling*
  • Gene Expression Regulation, Plant*
  • In Vitro Techniques
  • Molecular Sequence Data
  • Phylogeny
  • Repressor Proteins / metabolism
  • Sequence Homology, Amino Acid
  • Transcription Factors / metabolism
  • Transcriptional Activation*

Substances

  • Arabidopsis Proteins
  • DNA-Binding Proteins
  • ERF protein, human
  • Repressor Proteins
  • TINY2 protein, Arabidopsis
  • Transcription Factors
  • Abscisic Acid