Structure-based drug design to the discovery of new 2-aminothiazole CDK2 inhibitors

J Mol Graph Model. 2006 Mar;24(5):341-8. doi: 10.1016/j.jmgm.2005.09.012. Epub 2005 Nov 2.

Abstract

N-(5-Bromo-1,3-thiazol-2-yl)butanamide (compound 1) was found active (IC50=808 nM) in a high throughput screening (HTS) for CDK2 inhibitors. By exploiting crystal structures of several complexes between CDK2 and inhibitors and applying structure-based drug design (SBDD), we rapidly discovered a very potent and selective CDK2 inhibitor 4-[(5-isopropyl-1,3-thiazol-2-yl)amino] benzenesulfonamide (compound 4, IC50=20 nM). The syntheses, structure-based analog design, kinases inhibition data and X-ray crystallographic structures of CDK2/inhibitor complexes are reported.

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Crystallography, X-Ray
  • Cyclin-Dependent Kinase 2 / antagonists & inhibitors*
  • Cyclin-Dependent Kinase 2 / chemistry*
  • Drug Design*
  • Entropy
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • Inhibitory Concentration 50
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Binding
  • Protein Conformation
  • Sequence Homology, Amino Acid
  • Structure-Activity Relationship
  • X-Ray Diffraction

Substances

  • Cyclin-Dependent Kinase 2

Associated data

  • PDB/2BTR
  • PDB/2BTS