Managing and mining protein crystallization data

Proteins. 2006 Jan 1;62(1):4-7. doi: 10.1002/prot.20776.

Abstract

The crystallization of macromolecules remains a major bottleneck in structural biology. The routine screening of more than one thousand crystallization conditions and subsequent optimization by fine screening presents a challenge to conventional laboratory notebook keeping. In addition, the development of high-throughput robotic crystallization and imaging systems presents a pressing need for low-cost laboratory information management system (LIMS). Here we describe CLIMS2, a crystallization LIMS that features a simple, user-friendly graphical interface, allowing the storage, management, retrieval and mining of crystallization data. The CLIMS2 executable and documentation is freely available at http://clims.med.monash.edu.au.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computer Graphics
  • Crystallization
  • Databases, Protein
  • Information Systems
  • Macromolecular Substances / chemistry
  • Proteins / chemistry*
  • Proteins / isolation & purification

Substances

  • Macromolecular Substances
  • Proteins