Molecular and biochemical characterization of a serine racemase from Arabidopsis thaliana

Phytochemistry. 2006 Apr;67(7):668-74. doi: 10.1016/j.phytochem.2006.01.003. Epub 2006 Feb 17.

Abstract

A cDNA encoding a homolog of mammalian serine racemase, a unique enzyme in eukaryotes, was isolated from Arabidopsis thaliana and expressed in Escherichia coli cells. The gene product, of which the amino acid residues for binding pyridoxal 5'-phosphate (PLP) are conserved in this as well as mammalian serine racemases, catalyzes not only serine racemization but also dehydration of serine to pyruvate. The enzyme is a homodimer and requires PLP and divalent cations, Ca2+, Mg2+, Mn2+, Fe2+, or Ni2+, at alkaline pH for both activities. The racemization process is highly specific toward L-serine, whereas L-alanine, L-arginine, and L-glutamine were poor substrates. The Vmax/Km values for racemase activity of L- and D-serine are 2.0 and 1.4 nmol/mg/min/mM, respectively, and those values for L- and D-serine on dehydratase activity are 13 and 5.3 nmol/mg/min/mM, i.e. consistent with the theory of racemization reaction and the specificity of dehydration toward L-serine. Hybridization analysis showed that the serine racemase gene was expressed in various organs of A. thaliana.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alanine / chemistry
  • Alanine / metabolism
  • Arabidopsis / enzymology*
  • Arginine / chemistry
  • Arginine / metabolism
  • Catalysis
  • Cations, Divalent / pharmacology
  • Dimerization
  • Escherichia coli / cytology
  • Escherichia coli / genetics
  • Glutamine / chemistry
  • Glutamine / metabolism
  • Hydro-Lyases / drug effects
  • Hydro-Lyases / metabolism
  • Hydrogen-Ion Concentration
  • In Situ Hybridization, Fluorescence
  • Metals / pharmacology
  • Molecular Sequence Data
  • Pyridoxal Phosphate / metabolism
  • Racemases and Epimerases / genetics*
  • Racemases and Epimerases / metabolism*
  • Sequence Homology, Amino Acid
  • Serine / chemistry
  • Serine / metabolism
  • Stereoisomerism
  • Substrate Specificity

Substances

  • Cations, Divalent
  • Metals
  • Glutamine
  • Serine
  • Pyridoxal Phosphate
  • Arginine
  • Hydro-Lyases
  • Racemases and Epimerases
  • serine racemase
  • Alanine