Genome cloning and analysis of the large RNA segment (segment A) of a naturally avirulent serotype 2 infectious bursal disease virus

Virology. 1991 Sep;184(1):437-40. doi: 10.1016/0042-6822(91)90865-9.

Abstract

The genome of infectious bursal disease virus (IBDV) of serotype 2 (strain OH) has been cloned, and 3171 nucleotides of genome segment A cDNA sequence have been determined for the first time. Sequence homology of OH-IBDV with the most distant serotype 1 IBDV at the nucleotide level is 83.1%, and the amino acid sequence homology of the polyprotein is 89.6%. Alignment of the polyprotein amino acid sequences showed the hypervariable region in VP2 to be 151-152 amino acid residues long in IBDV. A second variable region, 37 amino acid residues long, was identified in the N-terminal third of the IBDV VP2 molecule. IBDV strains, like the IPNV strains, also contain inverted repeats that may form stem-and-loop structures in the 5' noncoding sequences. These inverted repeats are variable between the two IBDV serotypes, particularly at the AT basepairs.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Chickens
  • Cloning, Molecular / methods
  • Escherichia coli / genetics
  • Genes, Viral*
  • Infectious bursal disease virus / classification
  • Infectious bursal disease virus / genetics*
  • Infectious bursal disease virus / pathogenicity
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Open Reading Frames
  • RNA, Viral / genetics*
  • Sequence Homology, Nucleic Acid
  • Serotyping
  • Virulence

Substances

  • RNA, Viral

Associated data

  • GENBANK/M55473
  • GENBANK/M55474
  • GENBANK/M55475
  • GENBANK/M55476
  • GENBANK/M55477
  • GENBANK/M55478
  • GENBANK/M64316
  • GENBANK/M66722
  • GENBANK/S48634
  • GENBANK/S48737