Chicken T-cell receptor beta-chain diversity: an evolutionarily conserved D beta-encoded glycine turn within the hypervariable CDR3 domain

Proc Natl Acad Sci U S A. 1991 Sep 1;88(17):7699-703. doi: 10.1073/pnas.88.17.7699.

Abstract

Unlike mammals, chickens generate an immunoglobulin (Ig) repertoire by a developmentally regulated process of intrachromosomal gene conversion, which results in nucleotide substitutions throughout the variable regions of the Ig heavy- and light-chain genes. In contrast to chicken Ig genes, we show in this report that diversity of the rearranged chicken T-cell receptor (TCR) beta-chain gene is generated by junctional heterogeneity, as observed in rearranged mammalian TCR genes. This junctional diversity increases during chicken development as a result of an increasing base-pair addition at the V beta-D beta and D beta-J beta joints (where V, D, and J are the variable, diversity, and joining gene segments). Despite the junctional hypervariability, however, almost all functional V beta-D beta-J beta junctions appear to encode a glycine-containing beta-turn. Such a turn may serve to position the amino acid side chains of a hypervariable TCR beta-chain loop with respect to the antigen-binding groove of the major histocompatibility complex molecule. Consistent with this hypothesis, the germ-line D beta nucleotide sequences of chickens, mice, rabbits, and humans have been highly conserved and encode a glycine in all three reading frames.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Binding Sites
  • Biological Evolution*
  • Chick Embryo
  • Chickens
  • Gene Rearrangement, beta-Chain T-Cell Antigen Receptor*
  • Genetic Variation*
  • Glycine*
  • Major Histocompatibility Complex
  • Molecular Sequence Data
  • Oligonucleotide Probes
  • Protein Conformation
  • Receptors, Antigen, T-Cell / genetics*
  • Sequence Homology, Nucleic Acid

Substances

  • Oligonucleotide Probes
  • Receptors, Antigen, T-Cell
  • Glycine

Associated data

  • GENBANK/M73064
  • GENBANK/M93098
  • GENBANK/M93099
  • GENBANK/M94195
  • GENBANK/M94196
  • GENBANK/M94197
  • GENBANK/M94198
  • GENBANK/M94199
  • GENBANK/M94200
  • GENBANK/X53420