U2 snRNA-protein contacts in purified human 17S U2 snRNPs and in spliceosomal A and B complexes

Mol Cell Biol. 2006 Apr;26(7):2803-16. doi: 10.1128/MCB.26.7.2803-2816.2006.

Abstract

The 17S U2 snRNP plays an essential role in branch point selection and catalysis during pre-mRNA splicing. Much remains to be learned about the molecular architecture of the U2 snRNP, including which proteins contact the functionally important 5' end of the U2 snRNA. Here, RNA-protein interactions within immunoaffinity-purified human 17S U2 snRNPs were analyzed by lead(II)-induced RNA cleavage and UV cross-linking. Contacts between the U2 snRNA and SF3a60, SF3b49, SF3b14a/p14 and SmG and SmB were detected. SF3b49 appears to make multiple contacts, interacting with the 5' end of U2 and nucleotides in loops I and IIb. SF3a60 also contacted different regions of the U2 snRNA, including the base of stem-loop I and a bulge in stem-loop III. Consistent with it contacting the pre-mRNA branch point adenosine, SF3b14a/p14 interacted with the U2 snRNA near the region that base pairs with the branch point sequence. A comparison of U2 cross-linking patterns obtained with 17S U2 snRNP versus purified spliceosomal A and B complexes revealed that RNA-protein interactions with stem-loop I and the branch site-interacting region of U2 are dynamic. These studies provide important insights into the molecular architecture of 17S U2 snRNPs and reveal U2 snRNP remodeling events during spliceosome assembly.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cross-Linking Reagents
  • Humans
  • Lead / pharmacology
  • Protein Binding
  • Protein Interaction Mapping
  • RNA Processing, Post-Transcriptional / drug effects
  • RNA, Small Nuclear / genetics
  • RNA, Small Nuclear / metabolism*
  • RNA, Spliced Leader / metabolism
  • RNA-Binding Proteins / radiation effects
  • Ribonucleoprotein, U2 Small Nuclear / metabolism*
  • Spliceosomes / genetics*
  • Spliceosomes / metabolism*
  • Ultraviolet Rays

Substances

  • Cross-Linking Reagents
  • RNA, Small Nuclear
  • RNA, Spliced Leader
  • RNA-Binding Proteins
  • Ribonucleoprotein, U2 Small Nuclear
  • U2 small nuclear RNA
  • splicing factor 3a
  • Lead