Sequence of the VP7 gene of chicken rotavirus Ch2 strain of serotype 7 rotavirus

Virology. 1991 Dec;185(2):853-6. doi: 10.1016/0042-6822(91)90558-s.

Abstract

The gene that encodes the VP7 protein of the Ch2 strain of group A chicken rotavirus (serotype G7) was sequenced, and its deduced amino acid sequence analyzed. The gene is 1067 bp in length and contains a single long open reading frame of 987 nt, capable of encoding a protein of 329 amino acids. Amino acid homology of the chicken rotavirus VP7 to the corresponding protein of rotaviruses representing each of the other twelve G serotypes ranged from 58 to 63%. In addition, the VP7 protein of the Ch2 strain contains a unique amino acid sequence in variable regions VR5 (A), VR7 (B), or VR8 (C), which is consistent with previous studies indicating that these three regions are involved in G serotype specificity. The VP7 protein had amino acid homology of 19 or 33% with that of groups B (ADRV) or C (Cowden) rotavirus strains, respectively. Attempts to produce reassortants in vivo or in vitro between the Ch2 strain and strains belonging to group A or C rotavirus were unsuccessful. The low level of nucleotide identity in the 5' end noncoding region of the VP7 gene between the Ch2 and the group A or C rotaviruses may account for this failure.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Antigens, Viral*
  • Base Sequence
  • Capsid / genetics*
  • Capsid Proteins*
  • Chickens
  • Cloning, Molecular
  • Genes, Viral / genetics*
  • Genetic Variation / genetics
  • Molecular Sequence Data
  • Open Reading Frames / genetics
  • Rotavirus / genetics*
  • Sequence Homology, Nucleic Acid
  • Serotyping

Substances

  • Antigens, Viral
  • Capsid Proteins
  • VP7 protein, Rotavirus

Associated data

  • GENBANK/S64910
  • GENBANK/S64911
  • GENBANK/S64912
  • GENBANK/S64914
  • GENBANK/S64915
  • GENBANK/S67843
  • GENBANK/S67851
  • GENBANK/S71417
  • GENBANK/S71418
  • GENBANK/X56784