We propose an experimentally realizable method to control the coupling between two flux qubits. In our proposal, the bias fluxes are always fixed for these two inductively coupled qubits. The detuning of these two qubits can be initially chosen to be sufficiently large, so that their initial interbit coupling is almost negligible. When a variable frequency or time-dependent magnetic flux (TDMF) is applied to one of the qubits, a well-chosen frequency of the TDMF can be used to compensate the initial detuning and to couple two qubits. This proposed method avoids fast changes of either qubit frequencies or the amplitudes of the bias magnetic fluxes through the qubit loops, and also offers a remarkable way to implement any logic gate, as well as tomographically measure flux qubit states.