A general method to cleave a known DNA sequence at any site

Biotechniques. 1991 Oct;11(4):432-4, 436.

Abstract

We describe a new method for obtaining DNA fragments starting at a desired point where there is no recognition sequence for any known restriction endonuclease. A single-stranded DNA containing the fragment of interest is annealed to a synthetic oligonucleotide hybridizing at the 5' end of the required fragment. Then, a partially double-stranded DNA is synthesized using the Klenow fragment of DNA polymerase I in the presence of the four deoxynucleoside triphosphates. The remaining single-stranded regions are removed by digestion with a single-strand nuclease, and the resulting 5' blunt-ended fragment is finally released by digestion with a restriction endonuclease at any site downstream its 3' end. The usefulness of the method was exemplified here by insertion of an epidermal growth factor-like African swine fever virus gene immediately downstream of the ribosome binding site of an expression vector.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • African Swine Fever Virus / genetics
  • Base Sequence
  • Cloning, Molecular
  • DNA / metabolism*
  • DNA Polymerase I / metabolism
  • DNA Restriction Enzymes / metabolism
  • Deoxyribonucleotides
  • Epidermal Growth Factor / genetics
  • Escherichia coli / genetics
  • Genetic Techniques
  • Molecular Sequence Data
  • Plasmids

Substances

  • Deoxyribonucleotides
  • Epidermal Growth Factor
  • DNA
  • DNA Polymerase I
  • DNA Restriction Enzymes